Scaffold Ga0209756_1007397

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1007397
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7858
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (96.30%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017909	Metagenome	238	Y
F023213	Metagenome	211	Y
F024418	Metagenome	206	Y
F029562	Metagenome	188	Y
F042574	Metagenome	158	Y
F046640	Metagenome	151	Y
F047913	Metagenome	149	Y
F062181	Metagenome	131	Y
F105880	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_100739711	F024418	GGAG	MIGKLVRHIELDAIGIVVDHFVWSEWEGGYKIKFLKPHPPTGALVNPFETIIGKASNFEEVTNESR
Ga0209756_100739713	F047913	GGAGG	MKVGDLLRLNEDLWLLLEVAEDLSDQSILIMSAKTGYRMWGDPRGFEVVSKCQENVKSGSDTLRQDSERVTL
Ga0209756_100739716	F029562	AGG	MKAGDLVRVSNTAVSIGWKPEQGYLGLIVSPVRLGEDAQYIRVKSVKTGVALWVRAYRLAPHNEAEGAQ
Ga0209756_100739717	F062181	GGA	MKVGDLVKLKYPRKPQHGGSGVIVGNDKTFVSLPNSPNYFRVIWTDSQTSLTGESWLKSEQIEVLNESR
Ga0209756_10073972	F017909	GGGGG	VRRRDNYFVFIVTRENVAAGHKVGDIGTGKTDSPIGIKDAPYGVFMTAPKSHIEFCAARENKSPIALSPEQIRDYVLSYWNPRKPKKTETKEEKEVVWVPHTW
Ga0209756_100739721	F042574	GAG	MEVGDLVKSPFTFFEGQLGLIIATDVWDEAVRGKWHIVKLFCNGEERTLCEYDMKVVKRCQENVKSDSNTLR
Ga0209756_100739723	F046640	AGGTGG	MKAGDLVKVHLLNDLDWREALGVFMGYQGRKDGYTSHSFVFVEGKRLRFESMDVKAVK
Ga0209756_100739725	F047913	GAGG	MKAGDLLRHNGNHSLWLLLEVESEEYSETLLVASVKAGHTMWARQEVFKVVSKCQENVKSAPNDLQSPSQHVTL
Ga0209756_10073978	F023213	AGGTGG	MPFKVGDMLKYHHPSSAPDEQLDLYHFGKDHLHGKLALVLEKSLTAADGTIDYLCYIDESKMWLDGEFLREVKDGNKKNNI
Ga0209756_10073979	F105880	GAGG	MGIRKTIFSRAISFLSMFLLPEDAKELFEELRAIAEGQYRNRGGEE