Scaffold Ga0209756

Basic Information
Taxon OID	3300025141 Open in IMG/M
Scaffold ID	Ga0209756_1006467 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025141 Open in IMG/M

Scaffold ID

Ga0209756_1006467 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8599
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (90.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8599

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (90.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)	85
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009527	Metagenome / Metatranscriptome	316	Y
F054789	Metagenome / Metatranscriptome	139	N
F067591	Metagenome / Metatranscriptome	125	N
F090175	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_100646716	F067591	AGG	MATWQKQTKNISMALAVIGGLWMTLTVGIGDVFNIITDPASVDAATAASMGGIDFIDRIAVAGVAVTLLGGAGLGLISTSSQNPPFVNTILKFAPLIIGFVAFSAFGTEAWDLVSGNRTWANYDDIQNSYMLFLASSMVAGVVGVLENR
Ga0209756_10064673	F090175	GAGG	LTESENIAESPPNKGRTWADVFVGASYITAGAVFLVIMGISIYFLIGKLPFWFFIAIGSSLLFIPFMTERAKDDSTLVMVTDGPHRLTEYRIGNKVGLEIEGNPVFFYSKSGVSRKVLTSIDVENKTAKGSEFAEHTQIDQVRDLNTLQNMVEMLQSTLQESRISSQTVGVEVEKQSIEIVDWALKTIYGAIIPTEISEAFGVEESVENLEVHETVEELVEDFE
Ga0209756_10064674	F009527	GAGG	MKKNIFPPAIINLLLQEGQRWEVGGEFREALGTGIIPIIASARGGKTSLAYVFIDYVIEHTKRPVILDSFPEKVIDEGIPEHWRGRVSNTSFNDIATVDEPAVWLLDDSATHFNSRSAMSSTNQTLAKAAGVLSHFGGGMTVLFTTQSLSGIDLSLLRYTTISPIVRWVDKDLIAQERKEWRGEIEHGQYELRKKSKDPRYRDYFWSSKDSCLVKAPYPDFLKKEIDPIKADLLSRPMRYHSIEDKQIMLGIVKPPAKKRAKRKKPEVEKE
Ga0209756_10064675	F054789	GAGG	MNREQQRKYDRIAAARLSKIKGGIPRHVALSNQRSITLRNKLNRLGLAGPHIEAAVSMVDELGLQEVLSKQPLGSRFASMPQAKRKSKVWSP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209756_1006467

Overview

Ecosystem & Geography

Associated Families

Sequences