Scaffold Ga0209756_1006190

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1006190
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8849
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018267	Metagenome	236	Y
F030886	Metagenome	184	Y
F067640	Metagenome	125	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_100619017	F030886	AGGA	MSYHGRPPPDYKRTGIAVVNPLIRIEQKLKKIQDVLDNISDASILTANDLKIKIQKVLDD
Ga0209756_100619020	F079212	GAGG	VNRDEKKLIHACIESHRRMIAHHRRQIIELSRKAIKESDSCIECFDMEIINESGRSGKSE
Ga0209756_100619022	F018267	GGAGG	VKVGDLISFKPKSFGDDDWSNPSIVIGGFINDDRQGGGWRDMIWIVWCDGGRYMVNERNDDVMYLTSSSQHNP
Ga0209756_100619025	F067640	AGGAG	MIEVGSLLKMKYGNTTWLALDEIADTVLVVSQKTNHKMWANKASFEVIG