Scaffold Ga0209756_1000531

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1000531
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37469
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (74.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019557	Metagenome	229	N
F022530	Metagenome	214	Y
F046647	Metagenome	151	Y
F098070	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_100053131	F022530	GGGGG	MLEKLRNAGVGYIAFGLGTVFGSIISSIMGTLIYQVVSGNNHATEILQITECLEERAEK
Ga0209756_100053136	F019557	N/A	MSGNRTPMTKYIDLGMKVASFSVVPLLLWVISLEVANAERDFQLEALQYRIHSLEEVNTTVQEYAVRLGKVDQKLESMEETVDEIRQDIKDLLRREN
Ga0209756_100053147	F098070	AGGAG	MKITKAKLKQIISEELSSMSEDGGIYEHEPEAAEEPEPAAVAIAKVEELGELIMNGDPGGEGALAMIEDLKVILDGMMTGPSNQVAQVHADAMEQK
Ga0209756_100053150	F046647	AGAAGG	MKLLFENWRNHLNEGVEEKYEKFFKPKGWYFESEILLGEGGYGKVWRATNIKTGQRAAIKVLPVGMDLGYPELKIELENYEFLKNNRNSMPKEVAKHFPDVYETGRIVSSIGYVIMELLEKMPASVDKALFQTSGDIEGRKVKTKRILTDPEVLSQIFDIVISDSYFNSHIYNKLGKLTKRESLSASYKIIEDIVKEAFRAYMASEPTPTLPTFTSGGGSLFATYFKSDEEKRLAAFILDSVLKVLSRIYENFDKAIAGELNDELGKEWDRYFLRSFANTTSQQLKGELAKSVIPSQMAQSSQYNVRKTAFPEAASLFNAMKAVQKDKFEPADVHGRNVMVRPNTNELVIVDVGLFDLMRGEE