Scaffold Ga0209756_1000202

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1000202
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58173
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (4.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026406	Metagenome	198	N
F044200	Metagenome	155	Y
F076604	Metagenome	118	Y
F087907	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_100020214	F044200	N/A	MSALPFNLNATTTKRAVGEKVEYITPGAHECKITGLTTSEQLEDYKGSPFIQYAVTSNGKVGRCRFWVVKETDKQSTQEWKTKQIKDFLINAGVKDFSDDSRAMNAAIGNSLMITFISEEYIGKNRDNEEPVIRTATKYRWSAKSGGKCTYNNDMNQTLTDEQMSEFSMKHSEWSKANNSMSASAADDEDMPF
Ga0209756_100020220	F026406	N/A	MKNSVVFEGGIDKVSTLADGSLRVYLGTPELTNETMVNLFGLIKKPGYVLISTNSINQDQIDAVEKATTNTEFSEKTPSQRMRGVMYKLWEKTQPKTMNGDTGQMEYIDFDLFYKRQMNKIIDHFKTKLD
Ga0209756_100020228	F087907	N/A	LDNPTKRYNIPIWLSKWIFIDGNKKKYILNNFIVKGHNKGEIFTNKKIVNKAVNKLKGGRKKGKIVPVNLSLISQHGFGINDN
Ga0209756_10002028	F076604	N/A	MSEVSTCCGCSYEDSTIADCCSVEMIQNSDICPACKEHTEATGYICNECGNWFEHTEDKRDHDARMEENYYEEKADARRKYRE