Scaffold Ga0209756_1000046

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1000046
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112401
• Total Scaffold Genes: 158
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 127 (80.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088745	Metagenome	109	Y
F098231	Metagenome	104	Y
F106100	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_100004622	F106100	N/A	MTWPIQLSSLCLTFRFDNNYLTRYIIYYHALGGHMDMITVLIPGGFKPPHVGHYKFFMHYINNPEVSEVRIFCGERQRKVGDDFAVSIEQAEAVLRLYGILDNPKVIYQRASVRKGKNGHYTNPFADVFDWAEENYDKTENQISLGMSSKDTGYQAGFLGYFKSFANIVEIQHSYEQEDFVSATEFREALAAGKPIDKFIPDHVNEEEIKKIFS
Ga0209756_100004678	F088745	GGAGG	MNKDLDTKIWLALDKTEHQIRRSAYLATGEIFQKKIYEALDLIKEVKEEVEKRLDTKP
Ga0209756_100004679	F098231	GGAGG	MEVGDLVKQREVGVAILSEFIRSGLNMGMIGVIKIVHDKTNFSYDGRNRGDITVVWSNGREEVLPEIYLEVITNE