Scaffold Ga0209634_1171930

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1171930
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 860
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001523	Metagenome / Metatranscriptome	678	Y
F003364	Metagenome / Metatranscriptome	491	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_11719301	F001523	N/A	MNTTTIAVTTAAAMGLLTIMATKASSMDFSVAGQTLSIGADSDINYTTGVEEWEWELTPSAGITSMGIGLSVATDIDMLELDEGDIFQGLDFTAKYEIPSTYINLYTEVSTDSDLEFGDVTVGAMASF
Ga0209634_11719302	F003364	N/A	MWIAFMLLCTGPSALSCEVMAKTDATFSTEEACAEEALLVTRYFEEQGYLAIPDCKKINMGVSL