Scaffold Ga0209634_1137239

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1137239
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1019
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F024420	Metagenome	206	N
F050005	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_11372392	F050005	AGGAGG	MYNKSNYPLFHEFKIMKIGNVFFNTSVDDIIDQEIEETTIIINQLKDINQFLEV
Ga0209634_11372394	F024420	GAGG	MSIYEELRKIIDRNSCWQQEGRKFELLWNLLLSSDKRSFSEYFEEEHSIKLYDAMTFKEILILCRDYNVGGRFKXK
Ga0209634_11372396	F010277	GAGG	MSNALKDKLLEVELFVGEKLKDYTNEQVIEKVRKEFGLQMFVDHAEELLHEFQQEVILERLQ