Scaffold Ga0209634_1121412

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1121412
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1114
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F013536	Metagenome / Metatranscriptome	270	Y
F094392	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_11214122	F094392	AGG	MKEIDRLLKQWIPVNTIIRAEIRAAIVKEINKYKQNTNTNG
Ga0209634_11214124	F013536	N/A	MQTIKHLKNNYIQLNKTIYKPYTICQLADTKFGQIDSDGYSLVNQWFNYKGFTYVAV
Ga0209634_11214125	F000126	N/A	MAQQSINMRDFKITKNKGEWYYTIVTDSYGNKYDNHFEHAHEANSWIYYIWEKEEWFNSTNSQDLLANAVANLARIDEENNITKII