NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1108670

Scaffold Ga0209634_1108670


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1108670 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1210
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003073Metagenome / Metatranscriptome509Y
F007346Metagenome / Metatranscriptome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_11086701F003073GGAGMAKKLENMTQDERIAYWAAQREKERINRRNRIAKLSMEQRAAVIDINKLLDKVLDVALYPDMGGIRMVSAYDLQELSDAMDTL
Ga0209634_11086703F007346GGAGVNMNSNEIRGIQLSQAVQWSGQDIFEVASAAFEDANYHSFNEVFTAAWNEFQKELEDG

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