Scaffold Ga0209634_1107286

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1107286
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1221
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004162	Metagenome	450	Y
F017556	Metagenome / Metatranscriptome	240	Y
F089527	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_11072861	F017556	N/A	MSYAKFKEGQVVSFPSAGTVGNRARKGGTITVVEKMYELKEDKKYFYPNGKCRGELTTIKELSNGEFKGYAYKCKTIQPNGFTAEIVMVEEFKLKATTKKKVLNSYTIYA
Ga0209634_11072862	F089527	N/A	MANMNKKSRQGKTPQQYRDSSRFAWYGVVGMVLLLILTSLLMGCATTQPTKKCCEKIHVITEWDGNRQINWYSSTKEK
Ga0209634_11072864	F004162	N/A	MGKTQKVATLLGERQKIEKEIEKIQNSCQHLIKSIKNVRERLDSTTIVTRYVCDECSLIIGIPNNDELQNFLKQ