Scaffold Ga0209634_1073552

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1073552
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1596
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032443	Metagenome	180	Y
F047361	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10735522	F047361	N/A	MTIKMKFSRNNTGSITMYDGEEIQHNHKKSFCLIGLEEKEPEQIIHTLNKVFPTDHVAVFLWPKGNGDFSNPMLKYACIHARFTVVDKKATPLFLEEDVLIEKKTYVVTEQETWEDIFARIKKERFPD
Ga0209634_10735523	F032443	N/A	AAINTFIDGLTAHIQFTSLAEDLQLRTLMTRISQNANWKQYFIDYEENSANLNPIYTTGGALDKTAIIDTVLRDQGLPDVLDFVDLGAVANKAKKDSRIDTKGYDLLTVEQQIADACKQLSITTDNRSVYNQSESLLANLDKRDRDVIAGQLDLNQDADTLS