Scaffold Ga0209634_1070693

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1070693
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1641
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009716	Metagenome / Metatranscriptome	314	Y
F015932	Metagenome / Metatranscriptome	251	N
F018617	Metagenome	234	Y
F018621	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10706931	F018617	N/A	MNNGKLSKQDIENDLILILEKYPKSIEKTVSICFGLILDCFVVIFGEKKTIKLLDEAKKSVREGNHTQNAVKTRKTTKRSKK
Ga0209634_10706933	F015932	N/A	MKLNTPDILWKLDNLADQVCLDNDNIVRWCIDQNDLDNVPDRTARGILQKHGLKVSDLKTLDNDGVLVHRLGDDIPGGMVDDRCLHISTHLVPVLRVLPNILDKVW
Ga0209634_10706934	F018621	AGG	MKATEKIKLMMRLEKGFQKLDFEELHMIRDTLNKEIENKTKLLFRGEKLHKAITERELKKPSRW
Ga0209634_10706935	F009716	AGGAG	MIEKINNEDIPTSMKMPTDSKLSEKSKNVRKEIDDWLKEGNKKTIIPTKE