Scaffold Ga0209634_1062064

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1062064
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1793
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044730	Metagenome	154	Y
F065117	Metagenome / Metatranscriptome	128	N
F071648	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10620641	F065117	AGGAG	MKKKTKNKKTKVKMTVDGYYTDNNGFWTIYKTESGMTVMKKEKKDNDN
Ga0209634_10620646	F071648	AGG	MKYNCSVCKKKFTHKKTETLVGKLGPIPVNLCKTDLKKIMRNDELYLNDKR
Ga0209634_10620647	F044730	GAG	MIKGKLLILLFVILVGCTSTNKKMETHPTNNLNALEKFWDLLKPLRVLNGAGAVDFN