Scaffold Ga0209634_1052497

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209634_1052497

Scaffold Ga0209634_1052497

Overview

Basic Information
Taxon OID	3300025138 Open in IMG/M
Scaffold ID	Ga0209634_1052497 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2004
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060432	Metagenome / Metatranscriptome	133	Y
F077190	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10524972	F077190	AGGA	MDKMLRKLGLKDDYGYCDPSIVGFIVIWSAFGYMIYVAIGGIIERIL
Ga0209634_10524975	F060432	AGGAG	MTYEITHEQRLALLEAHNNLMTVLSTVADCHDLWLSDIRNLEKLQCDLHSIFKFVPKKDECGHRVHHANWVLDEDDDNDS

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