Scaffold Ga0209634_1050152

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1050152
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2065
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007985	Metagenome / Metatranscriptome	341	Y
F010695	Metagenome / Metatranscriptome	300	Y
F097119	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10501521	F010695	GGAG	MQNLNTTNQNPEKIHTIPGYAIGSFTCYNRDESGVAGIDTNVTIQLTSLEEMWYGHEENIDHPAGSEYPVSINVPHMKVMRDRVAASILNRTGIDITQYDSIIHATTHPGKDKDGNIIDHGHENIVRN
Ga0209634_10501523	F097119	AGGA	MRKAVQKLISNREMFRQLLARDILAILETVNSNTWCDLVTVREQLNNSASVRHYMDLCTAQGHCYLGFNDRFYRAIQGVNDKGYGITVRKDKQTNKLFVFNTNFADNYVESIADMFENWNANYNRNTGYKINAQLDEVA
Ga0209634_10501524	F007985	AGGA	MQQQYKVNNTVFNNIEEASAYVTTLNKAVTITPYTAPTKASIKLNVARNMLVREMLEWAGSFVHSMFPSTDVDWMYSFEDAEGNNDAGDCYYEDGNNVTFGTNMQWEDAKHDYQSAVDNFDSLLGDYNSVDTVEGLSDMLNNMYHTMSDHSSETDSYIEEIRHSVKQMCDASNNIAHSYDHPTRRTTISFAGNVDAMYDTYMTDRNS