NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1048119

Scaffold Ga0209634_1048119


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1048119 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2123
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007772Metagenome / Metatranscriptome345Y
F050383Metagenome / Metatranscriptome145Y
F093896Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_104811911F007772N/AFSYTLLKISWNLYDKHYTKLTEEQKSKVMDIYYDFY
Ga0209634_10481194F093896N/AMKLTNSERNIILVSLDHMEEHLFIIYEAGDITQDTFNLRMNTWKTAYKKIAKIKDYE
Ga0209634_10481197F050383N/AMNYLYEKLDELMNTIKYSYAAGIEEPDYLEDEYFEDVIEACKEIIELNEIINEQN

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