Scaffold Ga0209634_1042499

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1042499
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2304
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F021299	Metagenome / Metatranscriptome	219	N
F039389	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10424991	F021299	N/A	WDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAMKQQNGAMHPPTDKLGG
Ga0209634_10424992	F039389	AGGAGG	LAFLGDLGKFFGLGSSEEVLGSAGAAIGGAIGGPGGAVTGRELGKATGRATSNLAGSTADQPLEQSAVPTGEGKPGAQETSGSGSQRNIINLQNGRSGMQSEANLGLGINLLQQAGRFLSSRTGQIATGVGTGALFGMSGGDSKMKPILTQSRRNKAKVRQLVNFMGIEGTADFLSQSSGQNVTANDVVMLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRASSTTLIKN
Ga0209634_10424993	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVINGSYINNDLLTTGSQRNRVLVRFTNDTGATRTIRCGIFIG
Ga0209634_10424995	F002374	N/A	MNQVLLYVGVILASVSFFLCCYACLRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAM