Scaffold Ga0209634_1040003

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1040003
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2398
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003678	Metagenome / Metatranscriptome	474	Y
F039704	Metagenome / Metatranscriptome	163	Y
F102833	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10400031	F039704	N/A	YDAAANMIGVSTDMFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMRRAGTTLISNK
Ga0209634_10400034	F003678	GGA	MLYAPLFIASLSLILCFYACVRVGHLINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMLQLMQRQPNQPINGQIKNVGG
Ga0209634_10400035	F102833	GGAGG	MGFLDKLVSVAVPAVIGYATGGPVGAFAGAASGAEADKAKRKAKKQQQANNLQRNQMMNEFYGIGNTNANSGMSLSASQRQTQNAGFGSGFGSFLSDVGSNIINPLTGIFSQVRPFISQQSQGQPAIPTRTNIGGQESQQSGTQQAFIGGVPNILGQAARFLGSRTGQIGTGIVGGIGASMLSGGGGSMRITRKMKSQYRAVLNLAQGDYDAAANMIGVSTDMFIMVLLKRFRNDGPVVTKAALRKTKTTVRRL