Scaffold Ga0209634_1035176

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1035176
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2606
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007723	Metagenome / Metatranscriptome	346	Y
F019682	Metagenome / Metatranscriptome	228	Y
F031507	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10351762	F007723	N/A	MIKSIKSKLLTYLFTDWVKNETDLETLKVSKQFIKKREIEITGHIPIMGFRSHLKEDVI
Ga0209634_10351765	F019682	N/A	MLIVLESVGSIFDTQNGVIYPQNADGSYDKDFSISIDEEEVSLEWWESLSSEDFQIVKYGVSTESH
Ga0209634_10351766	F031507	N/A	MIKINDTIKFENKYGQIQEGTVTDTNYQCEFDADLSGCVRVEVDYGSSIIGTVNTLIDKSQII