Scaffold Ga0209634_1032458

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1032458
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2748
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y
F058071	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10324581	F003531	AGG	MKRKTWTENETELARQLLKIHSYATVGKMLHRSKNSVIGQFYREKVLNGYVPPSDSKYTHKKERNIHVNN
Ga0209634_10324583	F005656	AGGA	MKLRTLLNIQRSVEERAVPSDVLEFDSTHHSQSKDKEINILDLHLTHAIRILNNYLTDDVYPRYSNRKEINDHLDVIKDNLDDIKEVVNK
Ga0209634_10324589	F058071	N/A	MVTERSNFMKEVKNYEWSSLLDLTGKGLNQFNAVDQNLNCSQLMNNANLDWNVEMKPVLFAKGDDIVKSDKFYSLVKNDREVLTSGLTDSYHPMQNSQIAHIGDYVSRNTGIKFEHAFSYDRDKYVTFLAKTNGQFNI