Scaffold Ga0209634_1028887

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1028887
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2965
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002077	Metagenome / Metatranscriptome	596	N
F016474	Metagenome	247	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10288873	F002077	AGG	MNLLPQTNNTREISPQQEQFLSNLFDNGGNVTDAALAAGYAKGSVTWLKTSLADEIIHRTKNILSINAFKAATRLVSTIDNPVPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAVHGIVLLPPKKEVVIDG
Ga0209634_10288876	F016474	AGGA	MKTETYLIKHEYDQDQKEMVSKPCKIEMRWKIYDSFACLEIVGWEDKMETIKHHLYCHKDQTINILNSLNEQIDNANDLEPCQKDRFYFNENVGVQWGLHGQLDLEDAIASKKGGSINE