Scaffold Ga0209634_1023513

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1023513
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3387
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016204	Metagenome	249	Y
F055274	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_102351310	F016204	AGGAGG	MSKAKELYVSVLDIKFYVSDEDGNEILNKDGTTKEFYFDGRLKPLEYLCEDMTVQDLKEIKEEA
Ga0209634_10235139	F055274	AGGAGG	MNDFYNDTTNAYFNAIDIKKTISSNNLNHIKRVHGGTENEETLEELITDVVYFLENLTEQLKENEHEKY