Scaffold Ga0209634_1021345

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1021345
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3602
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002586	Metagenome	546	N
F006528	Metagenome / Metatranscriptome	371	Y
F008385	Metagenome	334	Y
F030249	Metagenome	186	Y
F096201	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10213451	F002586	AGGA	MIKVKLEANEVELALNIASKRYIGNLRMGKSFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDKQFYSDSDFQNNIEIRTQDKKDYNFLLIRPGEKKGKYILVIKDNDKDFNFSIMGSFLFKEDIPERLTDFGYPNRPPAYKILIKEL
Ga0209634_10213452	F008385	N/A	VKILVKELDTLVKTNIYGDYKICVKCGDPADVIESNKDYCCNCWFEKVNGKSFQEVEKLIKEEERFIKKK
Ga0209634_10213454	F006528	N/A	MTEKEKLLTDIEMEKLKIATFKNIIEGSRSINGVTWNRIKNHKRKEQIECLKQLSQ
Ga0209634_10213455	F030249	GAGG	MRNKYGLPLIFDYVKLTDDRRLKNLEHMIHNCPKGWKELWSKKLNQLRKNIHDRKRKTLN
Ga0209634_10213459	F096201	N/A	MNTYLITNNKNSDSYTKDFLNTSEARHWIINHLDLSNEWSINPVKKLHHTAYKKNYKNYILSTIEEDGEGKPLTTESKKIDYIFDRFNSEYGFMIERVGKYKAMSEWLSGLALDIEYYNDAIVDLAIKMGSIDPNPNDKLKNTVAANYWDFMANIIIGFEPKKQAA