Scaffold Ga0209634_1020052

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1020052
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3743
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F002586	Metagenome	546	N
F016274	Metagenome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_102005211	F002586	AGGAG	MIKVKLEPNEVELALNISSKRYIGNLRMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDNQFYSDSDFQNNIEIRTQEKKSYNFLLIRPGEKKGTYILIIKDNNEDFNFSIMGSFIYNDDLPPEKLSNFGYQDRPAAYKIELKELKPLEEDVGQDKF
Ga0209634_10200522	F002318	AGAAGG	MKAKDYKSITNILESKNKGKQFFTFMDFEDTEIRKKEVILPLPKQYFNNIIKLIKGDK
Ga0209634_10200525	F016274	GGAG	MIRNKFGLPLVYDFNIALRDKRRIRNLEYMRWNCPKDWQELWSKKLDQLKKNINERKNKTLY