Scaffold Ga0209634_1019300

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1019300
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3835
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067205	Metagenome	126	N
F106110	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10193002	F067205	AGAAGG	MKVKKHISIWYSLDIEIEERKNLFDTLSQWGIISQLSVCIYWKRFENNKFELFDIDECEERVDNAFRRAIDIKENLLRSWELDHSINEDVIEDAYNLISQQLKDLTDDHYKIQNIFKDIKANIILEQME
Ga0209634_10193006	F106110	N/A	MEKNKDVKVIVTGVSMSGESSLNEHNRTPKEDKEKFEGEEICNSREDD