Scaffold Ga0209634_1019142

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1019142
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3853
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045084	Metagenome	153	N
F047369	Metagenome	150	N
F090364	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10191421	F045084	N/A	VFVVEDWISQGRPAQHLTEEKMADLNAEQAYSTKVRGVNVIINLKDTDVEATKHSKERQFRHDEKISNNAIIQAVEMAIGKIIQDFANGELGNDEPFHIRMVGKGKVPALNVIAVLDMRKGPDTIKVITVMRKDDFKTDTFGGGEQKTYTVQTR
Ga0209634_10191423	F090364	AGG	MKLIMEQWRGFLQEGKYEAATTELTRKVIPHVKYIIDEVIPSDNVQNSRKDLILVIGKKYEIGKGLPKELEKEMYMAQFTFHIDKKLAEETGDKFQIGGMHMSDPYDRRDDYIKINSYFDIGFNEQDLNEYLGELKAVTIHEIQHGGQTTDVLDTAHPPKGPLNPLRWDYNKIDGIRGYYASDSETDTYTKEVYKRAKYHKVPYTEALDMRIKQFFDMFRRRRDKINAEDERETPGEYRVKYTEEELKDFFYNELRDKYIAFAKTKYPEAVGI
Ga0209634_10191425	F047369	GGA	MKKLLTEWRQFVLTEGMKTAARLPQGSAIAIKSRGTNPMFVYTYGGKPLYDKPNPRFNPGVPEGAPWGEVLIGKLKPNSQGDCSDAYGIDHSETASGWGPLLYDVAMEWASQNGGGLTSDRGSVSKDAFRVWEYYLEKRPDVESIPLDIRNRGYEKITPDDESDDCEQAVSVKYARDTNSDPKWGWSAQPTAYLYRVSGTPTTDALEASGQFLDQLEE