Scaffold Ga0209634

Basic Information
Taxon OID	3300025138 Open in IMG/M
Scaffold ID	Ga0209634_1018693 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025138 Open in IMG/M

Scaffold ID

Ga0209634_1018693 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3919
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3919

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F040182	Metagenome	162	Y
F059123	Metagenome	134	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10186931	F059123	AGG	MPKSIAEIKKENPYYENIPDIKLADTLYDKYYKESVSKEDFYLNAFPDLADQIVENQGIISPDDEMFMPEGGRELLNFRPTVGMIAERSGVSIDDPATSKARFGASLGINPDQKALAIKNSLSKLYKQDIDVRIGSNTGELEYYNPKTKKYALVDKPGADLGDFSDLGGDAMVILPDLITTIFTAGASKAIGAGAVMAGAGEYARLKIGQAAYDINKFNPDGSKVTEMQLAGEAAKTAGTSLAFGFGGLGVAKGIKAINNIVKGRIAPDDLVDYVGGKNNAEDLSRQINDKLEEAGLNSRLKYKTSQALNDPDLMAVQQKMETSPRLGFVGEMTEATTKEMNALNDYFSLLRSEFDPKGLLKNQNQYDVDNLIKGVITKRNEPQIKALIKQQEATENLLNQTINELPNGTKVATGVNVRSAIDDTRRIWKDNANKALVKLDEASGGVKIKSDILGKAIKEIDDKQLDTIFNMADPSIGKYLRGDEILDGSATLNISTLRNTMSYLKRQIRKGEKGLTTEDIDTGAYKYIVGKINEQIVRDAPPKFVTAFDTYNDIYAKGKQRLDNTIVADVMKTRGGRLVYGDDFVFDLTFKTGKNSTRVADDIHDVIKDYPDAMLSYKGSINDLYKSKVIVNDKVNIKKHNEFIKNYESKLKIFFNPKEYNEIIKIGGFQKTINNIEKTREDILKSLSKSFEGKLQNASSGELLEKIYKPNNIGQIKELKKILSKDPEIFQAFQNSVLKDLNERVTVKHGTIGIDVVSPARFKSYIYGEGGEKGYQFALKEIFGEAYMKNLKLLNDSLQITARKAPAKLAEEGVYGNIVTDFIRVKVGQFSQAGRLLTAGKRIYHKTSNSIMANAILNPENLADLMKLKKLNPKSAEAAYILGKLNGMLYFDQTQDGER
Ga0209634_10186933	F040182	N/A	GLSSDLQTSYNNAKNNISSILGTNQQFGYSAQPYGLLSSTNMSDNPFNIPYLQQRGLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209634_1018693

Overview

Ecosystem & Geography

Associated Families

Sequences