Scaffold Ga0209634_1018176

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1018176
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3990
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F014790	Metagenome / Metatranscriptome	260	Y
F025595	Metagenome / Metatranscriptome	201	N
F034715	Metagenome / Metatranscriptome	174	Y
F059364	Metagenome / Metatranscriptome	134	Y
F069051	Metagenome	124	Y
F076488	Metagenome / Metatranscriptome	118	N
F077775	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10181761	F034715	N/A	HGPMMDNDTNCTRCGEKHSATHRVEEMTGWEDEDIESEVEEIF
Ga0209634_101817611	F077775	AGGAGG	MKKSKCSICTKAFTHIKPDTLVGKLGPIPVQFCRPCFKKVMKHDHLALNDTRRAPKMVSF
Ga0209634_10181762	F059364	GGAGG	VKTLLISGCSYGIVYSEIESELKDIFEVDRIVNLSSAGASPDRQIRVVIEWIAQNGKPDMVIMPVSHYNRFDLPIAKNFDPLHNLHLKASWQWKINEDAVDTNTVSIDTLKTFMKTGAMVYQIEHTEHDKLFVKLITFQAYLELNKIRHLIFDTGNYYEKQWMEYLSIDDENNSGYQPGMKKRDLIENSPGIYRLLSFCSNVWMYEQLTEDEKRNYVQWTDGNSAEGPLPYPLRQKTVNQLPHEYQQALNEDTATINHRKETVVKLMKHLHKEGAIHG
Ga0209634_10181763	F000302	AGGAG	MVETMTQDTKERIRELEGQKIILEDRLEHLGYSGNLIKMHEIEEEIFEIDDTIVKLIGKV
Ga0209634_10181764	F069051	N/A	MNHDVELFSDKNFRPDDYRWDLHKNGKLLNILYYGGTFGTFLKYFLERFSTKTPDMTVSPFTDIGTSHALSRKDFSGLIQAYHQSFINDNKGETNLPVCIIVPSKKKHYLYLKKGQWSRSGPQKVTPDDLWKNALGEMPERIRNYANNIVKLYDIKDTAHFSWIPKFIVRDWYKLEFLRNLEDTYNYQWFEAFKGHEFFKGQRVFELDLGAFFDWETFIENITGLNDMFDLSLDFDQQAEMKEIFNKGLSLDVVRQECNVAEDILERGLDTDLRRLDVATEAFIYAEMERKNDFIQMPLTNRFFRDTEEMHQFVEYYPNHYKAMNPNMPKFNGIPNPYHLHKNK
Ga0209634_10181765	F014790	N/A	MQKQIENKIQEFAKSTGLTERVTMSHGTLYVLLLQPERCDFFHNVVRTFYKDNINPEGGVDMHPVGDEFAFDFVEGNKDNYHAENGVWSEFAEEEMFNNMDDEDESPAFPSYNEIPDEVDVMLNLEAEAKEGK
Ga0209634_10181767	F076488	GAGG	MISEYDEVKAILVKHDVDLDKDIDYMMETIVYGEPLFQELFEYFIGDMPYDVAKGRADLMSDEWIVDRVQALGLIKEEA
Ga0209634_10181768	F025595	AGGAGG	MTVRYNFNGMSNRLEVLTSIKENIQDGDTDTAIDMINQMIELEPQPEETKPVADALDHHQIMQKGIVR