Scaffold Ga0209634_1016312

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1016312
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4270
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051550	Metagenome	144	N
F051944	Metagenome / Metatranscriptome	143	Y
F067740	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_101631212	F051550	AGGAG	MKFTNSWEERQSVPDMADECMQKYFKKNNLIEGEDWIKLGPDPKLTPNMKKMWIALQIILIPDYVFVIKDKLYIAEVKGTLKFKQSDYIHLSEMYDKAKLYKDVRVGITYFSHPNAEPVWLSYKKVTTQWNDERIPMKFYPELDLHGNKKPYKILLNN
Ga0209634_10163124	F067740	AGGAGG	MKVKDMIEMLELADKDSQVMLEVRDKNMNSVGYYEVGSDHHETGGYSSDELDYFEWMKQPKSKAMVELTLKIDEWVSIGID
Ga0209634_10163127	F051944	AGGAG	MIYEVHSVSVYGGSMIFKYDNKHDAKCKVRELKDLGGMFLVRVIELESSE