Scaffold Ga0209634_1014785

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1014785
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4533
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006528	Metagenome / Metatranscriptome	371	Y
F008385	Metagenome	334	Y
F071633	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_101478511	F006528	N/A	NYILMKDKEKHLIKDIEKLAIETFKNIIEGSRSINGVTWNRIKNYKRKEQIECLKQLSQ
Ga0209634_10147852	F071633	N/A	LKVVFLILVIYTGDGNLSYQKIPFNYSDQPITCEKMYSEKVKYVENPDYKEGNGQVWILTKYKNKNVIAHYCKDKEGNYVR
Ga0209634_10147859	F008385	AGGAG	LVKTNIYGDYKICVKCGDPADVIESNKDYCCNCWFEKVNGKSFKEVEKKMKEEERFIKKK