Scaffold Ga0209634_1013237

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1013237
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4851
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006892	Metagenome	362	Y
F016879	Metagenome	244	Y
F017558	Metagenome / Metatranscriptome	240	Y
F058519	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_101323710	F006892	GGAGG	MSDTGIIIPLKERIRDLENINEAHQKKNGQLRQEIQDKDKLIKELQEKLNNPLNKMREQGEI
Ga0209634_101323711	F058519	N/A	MANHLKIIGEAYQKFNDTNTSVSANKEPHSLRAFKRYKLNSEQRNKCTNASLTLGTLGHDISEKAIVKNLSVEECIADKEIQDKIKSYVTVDMKDQMKFEFGIKFLKDICQNHIENIKELPKQKWQTEIEHVKWIDPINVPFRMFIDLTGDTHINDLKNKFPTVKYAPLKTKQTKENPNRIGDWTCSHPKIDQRAFTGDLMQIALYSHTTGLKPSLSYASATDRILFTEKNCEELQPENLKRNLQELIAYEIAWEKKLKAANGSVDELLWLNIPDFSEIRKGSFWWNSIPQEYMEDYLKTYV
Ga0209634_10132372	F017558	N/A	MFFIIYKNKNNILTSYSNQIFSTEAEATDYGSRSLKRKDVWQVVRYDKENYDKYWYKN
Ga0209634_10132375	F016879	AGG	MSVFKESFFEASFKTIEEFDSAEVAAASNVSDNAELTIMDIKLDKSLIKTNNDKEHENATKQHSKIVPEIKQSS