Scaffold Ga0209634_1012486

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209634_1012486

Scaffold Ga0209634_1012486

Overview

Basic Information
Taxon OID	3300025138 Open in IMG/M
Scaffold ID	Ga0209634_1012486 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5039
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051981	Metagenome / Metatranscriptome	143	Y
F059332	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_101248611	F059332	GAGG	MSTFLSLIGIICMILAVGAIDGPTLETSGNNFVLCFVLAAVGIMSMFLALINQSKEIK
Ga0209634_101248612	F051981	AGGA	MKKLQFNNLDLILDWIKEPSHKEHLFLLEAAIAKAKGSTKSELSVGQKVTFGRPNGRQHIGIVEKINISKAVVNCNGSKWRVPFSMMKEVA

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