Scaffold Ga0209634_1010464

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1010464
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5617
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F011253	Metagenome	293	Y
F052889	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_101046410	F004629	AGGAGG	MIPSKLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFSLIDRLYGIGKDKDSYKGEDKPRMKIRLNGEQLQVYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKQFFLPHSYEKVRSDYYKALYELMSLYNSKGYKFICK
Ga0209634_101046411	F011253	AGG	LNRKLELQKIIKDMAKNKSLPYANAITKIKKDRKGYFQAKDIKQKQKSLSTDRFQQYLKTIQEEDDTQ
Ga0209634_101046414	F004990	AGGA	LELDDYFDPKKPCIICKKGADLREANKYYCVDHYALYVLGKPMSQIEKELNNND
Ga0209634_10104647	F052889	AGGAGG	MQSKTDHIYSTAIAYACYKSGAKRVDDNLLKSMFRDLCLLSDEYAFDYKQELKEILKEG