Scaffold Ga0209634_1009409

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1009409
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5976
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025387	Metagenome / Metatranscriptome	202	Y
F026152	Metagenome	199	Y
F042572	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10094092	F025387	GGA	MTKRVEQLGEMIVRAITYPIRATIGVCQCIHKSTPDTLDDCMPFEIKKKEDKDGDKTTS
Ga0209634_10094095	F026152	AGGAG	MKKTKLGTPKFWTAKAWAEHMLWISGFTNNKEVNYVQSNTRKKVPRKSNKSKQSSKAAV
Ga0209634_10094096	F042572	AGGAGG	MSRNLIVYKVEYRLRSDPWDNAKFIKTKRIVMTPDEVNQTGGYWRNHRNVERKFFKQMDSMEGDTYNSRYQLRSIKKAXKKLN