Scaffold Ga0209634_1006842

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1006842
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7221
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045049	Metagenome / Metatranscriptome	153	N
F071292	Metagenome / Metatranscriptome	122	N
F071656	Metagenome / Metatranscriptome	122	Y
F085783	Metagenome / Metatranscriptome	111	Y
F102062	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100684211	F071656	N/A	MNHEELSEQLHKNQMANKSYRNLPQKIMMEKWEAAGRDLHTYWNSIEWDSEWLKHDTPEEKLRKDVKRDFERHPLKNWIRKPKELIKF
Ga0209634_100684214	F045049	N/A	MIKKFKLFWDKFTTRFAVPLLIVSMVWNTYLGWESRTNARAAEYRLKSYILEHRHLPIEENIYTITSVDGEEIEIDESTYGEVDWRWLKENGWEDMIPSPMDNLTPEGISDIYLGKIFN
Ga0209634_10068426	F071292	GAG	MEIFIVIAFNKADFYPVGVTDNLVLAKQYAQREFKERAKSHRVYVYKKMMNAPQMMEDKIVYKI
Ga0209634_10068427	F102062	N/A	MVITKKIKIMKILIWIKRDEAITGNISEYYTYLPFNESFEENNEDIEWVQVQITQDEFARLEDK
Ga0209634_10068428	F085783	AGAAG	MLKWFRTNKMLRKLLSKKTEEADNIRTDWFRQRKEISELERELQLARRMWDELDKTKRY