Scaffold Ga0209634_1004565

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1004565
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9116
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024584	Metagenome	205	N
F039351	Metagenome	164	N
F060351	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10045654	F024584	GAGG	MYFKLVSKNGYRDLVRNARRICVSQLSEEEKSAAFVELYGVLKEKLFESTRSLNVEAAYADRCIHWNQNDLSQIKPVNNMRNPWLRFKREFEQCLDGKMPSKNVEIALAWFYAAPYRDDWIAS
Ga0209634_10045655	F060351	N/A	MTRKYDDMVWKILGGMPIEVFDEDDDTVWENETWELVKTRSEGDYKDSRAIGSANLITALNMVHQRLLVDGTVSEDITTLSHDIFNNILDKFTEDKLIRKRPENIRKTFQLIN
Ga0209634_10045657	F039351	AGAAG	MTVSYKIMVTGDSWSAGEWDPTLTPEETRAFAEKYSMSRYLRDLGHEVAHAANPGWGDFVSLNCLMTHEMGFDFVIYVKTCATRDFKHLTAENHPEAYNTTDLFEKIKLVKEMEYNILERYKHKLCLIGGIEKIEPDFDCSFKIPSITEFFYPDFKDTTIFGDYTHFEKYSDGDKKGAMKLWSIFEHKHNFWKEHPEYFASATDQVHPNRKATKALAEFIHEQLR