Scaffold Ga0209634_1004092

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1004092
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9682
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012403	Metagenome / Metatranscriptome	281	Y
F032478	Metagenome / Metatranscriptome	180	N
F037204	Metagenome	168	N
F047976	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100409214	F047976	AGGA	MAKRGAVIDMGRHKLVQSSWRSMDSMAYSHVYEPETRPEFRVYETGMAGQCHAEYQARLVADAEKQARYERLLLLKQKMIDKGLL
Ga0209634_10040924	F032478	AGGAG	MYWEIGITIDGVSGVYNVHPQPLEQSIWNHAVEHAMDMAQALYPNSRVELDFVKELDSE
Ga0209634_10040928	F012403	AGAAGG	MRITKINPVAKALAQSRRRTSVVPDKTKYNRKKDKKDANQNHINEKPKDN
Ga0209634_10040929	F037204	AGGAG	MNIEIYKSLSMYDFAMDVYQKAMHMKHDHNVEHYDIQEIITYLQFIDDMEKGNENHKD