Scaffold Ga0209634_1003561

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1003561
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10458
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006200	Metagenome / Metatranscriptome	379	Y
F013232	Metagenome / Metatranscriptome	273	Y
F015402	Metagenome / Metatranscriptome	255	Y
F057685	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100356115	F013232	N/A	MSDREIMNAKSGIPMWWKPGISFLKQDWINHPHLKHFRNKKSTDSNCDCSSPKLVELWEHDSCVRGRIDTTVCVKCDEVESLSIVR
Ga0209634_100356116	F057685	N/A	MGGNVDASWTCGCGSLNAGWRTTCGGCEEREIMENKTPRKDLLKILNTIKEDFKMLQDGSWSLQYSDGSEIEASLDNVDKAIKIVNKDLYGK
Ga0209634_100356117	F006200	N/A	MANNTQDWLEQLVKKYSIPTEETNEKRGVLNETQLKNLKNGKN
Ga0209634_100356118	F015402	N/A	MGRTKDFLDNLDLNEEELNAELYSRGDEDYQYKMWVNSPEFVEYVNGEIDNTKPIYSEHDIMSATRYASQQITIPPSEIGKEVYDMLYSEKIEEYLALGRNGL