Scaffold Ga0209634_1003160

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1003160
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11222
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004235	Metagenome / Metatranscriptome	447	Y
F096775	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100316015	F004235	AGGAG	MAGQTKVNPVVGEFIGEIRNIGKEVTMIAVDWDVDADASRAAMEAVHNTIMVRANILMAGAVYDTGTKQDFMLEGDYSNATGYVSADGTVTGTFVQALVEDIINLGTVDGVNFASGTVAAVAKTTLKFA
Ga0209634_10031609	F096775	N/A	MELLIKAIIGGIIIATVSTVSEKYPTIGAFVLGIPLASIVSFVFLYYAGVDIQTFKTLSTQTIYFVLVSLLFFPIFVYALPAYGFWIAMLLGTTISSVLMFGLYKFL