Scaffold Ga0209634_1002730

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1002730
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12228
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009521	Metagenome / Metatranscriptome	316	Y
F101490	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100273020	F101490	N/A	MKNYLVEPIEKQLKDFRSYETSIDREWGGKKRLLKCVDTQLEIKFCKAQMLFDESLIESPVKKKIEMIEMMYRAYSALVDKAADNGYSKLEDDFRCYKYRDNKIAIVCDTDAQIPRLKELHGTDKDVVLFSVEELFRLMHPDYLSTKETFKKKNLDIMFKRVSFT
Ga0209634_10027309	F009521	GAGG	MKYTLIINNGTLKGFMAFRGSCLAIMQSKFQRLKNQGHKLKLIRGEQ