Scaffold Ga0209634_1002383

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209634_1002383

Scaffold Ga0209634_1002383

Overview

Basic Information
Taxon OID	3300025138 Open in IMG/M
Scaffold ID	Ga0209634_1002383 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13185
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (76.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018089	Metagenome	237	Y
F020816	Metagenome / Metatranscriptome	222	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100238314	F018089	AGGA	MKNTTTQTPFEVKDPKASASYGQVQRIAMQFSKAKGCPKDIKFGTIRGHFLAKLNAKKFLTQGDVVKILSMKALPSADLKAMRSYKKLVSIS
Ga0209634_10023832	F020816	AGGAGG	MKVYEITVSTTIQIDSVDDYAESKDHAIDIMWDRWGVYKDTLEITKVKTWEEDDD

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