Scaffold Ga0209634_1001067

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209634_1001067

Scaffold Ga0209634_1001067

Overview

Basic Information
Taxon OID	3300025138 Open in IMG/M
Scaffold ID	Ga0209634_1001067 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	20563
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (67.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067642	Metagenome	125	Y
F087182	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100106714	F087182	AGG	VSQYTDKINAIAEDFATLEYFESLSALEARDGMLIIHYNHGGKKIEARIDSSYEGYKVKAGETIIIPPGDKDYIKLKERYSQETWGAKIGKLWKRISNMKVYRD
Ga0209634_100106739	F067642	GGAG	MEKPDPVEEAMKRILLEWPRNPRWIFTSPDQDKVYRQMRADVCPELFKNEKGTPNKQLYSIGGVVVGRDEDYGKTENKAW

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