NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1001067

Scaffold Ga0209634_1001067


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1001067 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20563
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (67.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067642Metagenome125Y
F087182Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_100106714F087182AGGVSQYTDKINAIAEDFATLEYFESLSALEARDGMLIIHYNHGGKKIEARIDSSYEGYKVKAGETIIIPPGDKDYIKLKERYSQETWGAKIGKLWKRISNMKVYRD
Ga0209634_100106739F067642GGAGMEKPDPVEEAMKRILLEWPRNPRWIFTSPDQDKVYRQMRADVCPELFKNEKGTPNKQLYSIGGVVVGRDEDYGKTENKAW

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