Scaffold Ga0209634_1000763

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1000763
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24455
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000898	Metagenome / Metatranscriptome	845	Y
F006896	Metagenome / Metatranscriptome	362	Y
F011526	Metagenome / Metatranscriptome	290	Y
F037677	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100076320	F006896	N/A	MANEAYENSWWGSPVQNGWGGIYYDLSVTSAIPNLLSTLQARASYYENVTCTTATLTELENIE
Ga0209634_100076322	F000898	N/A	MHIYKLVFDTEQQGKQVLIDNNVWQEVTEEGVTSMQYINGTKAVVYIGKVVEIPGTYDPDGHEITPPIYYDGVAYDIMSTDDLDFGNNEVYPADNAAHQFYGFPRNAEVPKP
Ga0209634_100076323	F037677	N/A	MDMQDIKLGALNLITFMVSFSNIEQWLKLTLLLVSIVYTIMKIINMSKQNKNG
Ga0209634_10007634	F011526	GGA	MIAIVECFIHHRTNKQVRISLPSKPQHFLLLTKAYENSLPYFIK