 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025138 Open in IMG/M |
| Scaffold ID | Ga0209634_1000621 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27411 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (68.75%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009291 | Metagenome / Metatranscriptome | 320 | N |
| F016497 | Metagenome / Metatranscriptome | 246 | N |
| F022105 | Metagenome | 216 | Y |
| F062240 | Metagenome | 131 | Y |
| F096042 | Metagenome / Metatranscriptome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209634_100062112 | F009291 | N/A | MLNLFAMTITPDQFKEIMRLFDAGDFESRKEAVSMLYEGFSRHYLIVIKRDFMYNKYDDAMAEEVLQDVFLSLLSKQTKPSSAFAISAWLKSYVFNVTRDRMKKSGFEVLPDDPDLGSDIPSNPGDSTMIEKCMEEVIKECGKDDPEGAELFSKVKVEGYAYSELTNIYGKTVSNLKKIVSEFNTMLKELIQPCLERAK |
| Ga0209634_100062115 | F062240 | N/A | MTKDEKDKIMKQLLADAGYDYEPKPRKDGDEIWTPCGQDIPKEPKLMSKETKDNLLKSKK |
| Ga0209634_100062117 | F096042 | AGGAG | MNVRNKIIKASALRNKVAYIQSANGKFGFKVEGKGTYIYTSEKAEDVSAMWKAESNLSERCIKKEVKSYELKVVGEDNFWVITELDGTVIVIDTIEYTMPYYMRPRTKKAKVRDWKLPHKCYGYYTDRSCLAMEEKDLKESEEKDSYYRWRANFVSLIKETFK |
| Ga0209634_100062121 | F016497 | N/A | MKNKKLENKKLENKKLEEITVQDMMLTPMGCKIVAETAIKSLATQIGKWAEEYPEERENYQADVEVLWRTLWLFNKCDFLFKEPEQKVEDLAA |
| Ga0209634_100062126 | F022105 | AGGAG | MKEDITVDFHITNTKYPIYRVSEWDKYQQYKKTSKRYVRQMPWFKFHARELLQQRRFVMLDADNFKFLVLIMCHASQDDGYLLFEDLVFQFRGILDEGQLKENLDFLVKNEFIQEANTSDFNDSRAFGWHRNNTNESISNNRRYKGNELEEVIGDLIYKK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |