Scaffold Ga0209634_1000615

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1000615
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27439
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (63.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F002495	Metagenome / Metatranscriptome	554	Y
F002586	Metagenome	546	N
F005019	Metagenome	415	Y
F005537	Metagenome / Metatranscriptome	397	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100061512	F002318	GGA	MKAKDYKSITNILESKNKDKQFFTFMDFEDTEIRKKKVILPLPKQYFNNIVKLIKGEK
Ga0209634_100061516	F005019	N/A	MNMYGDVRQCIKCDMNADIVEKGKNYCANCWFKYFSGESIEEYEKRVKQLDQVRNDKNKTRT
Ga0209634_100061517	F002586	N/A	MIKIKLEPNEVELALNIAAKRYIGNLKMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDNQFYSDSDFQNNIEIRTQEKKSYNFLLIRPGEKKGTYILIIKDNNEDFKFTIMGSFIYNDDLPPEKLSNFGYQDRPAAYKIELKELKPMEEDDR
Ga0209634_100061523	F002495	GGAGG	MSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKGASKNGNTKFVKVFAQVGVLFKGDDKFTGEMNYAEAGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIP
Ga0209634_100061525	F005537	AGG	MSDNVKFISEIERLLKQKQDDYGKFDHTSYVMSGILEKYLSVYNNCEVKVPLKLFGIFMIFLKLWRVMQSDSYKKDSFDDINGYAELLRRLVINEQEKR