Scaffold Ga0209634_1000600

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1000600
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27954
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002629	Metagenome / Metatranscriptome	542	Y
F006815	Metagenome / Metatranscriptome	364	Y
F010919	Metagenome / Metatranscriptome	297	Y
F011006	Metagenome / Metatranscriptome	296	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100060020	F006815	N/A	METNYSKETADSKFDEYVYRIEALCNKIEELKAKIEVSQIFKQ
Ga0209634_100060033	F002629	N/A	MRVNEAAWEKLKKQIEFYTEADSSISDISINYQVKPAKNKNYLRLNLKIDKWNKITE
Ga0209634_100060044	F010919	N/A	LWYINQYKTDMKDPVKLPLEEYRKLYAIKLRLEAYFSYMEDDRGVLKELAPSFLDDAKELINEYNKLTNEKAY
Ga0209634_100060045	F011006	N/A	MKQIIDKFLIKKNIRPYKIIALSTGVIVEHYRNGKLKTEYYE