Scaffold Ga0209634_1000516

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1000516
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30089
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008782	Metagenome / Metatranscriptome	328	Y
F018080	Metagenome	237	Y
F052205	Metagenome / Metatranscriptome	143	Y
F058456	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100051613	F018080	N/A	MEYLEIEIFKHFLKVYTYIVWNNKSVLGFISEDDIIELLDKKQVLDFYHFDKTNFKVLASKVDKYLHRND
Ga0209634_100051614	F052205	GAG	MSLSNSDIDELFDGKPSEITNSQWLTIEGNIDLTSLTTTMKTDILNRLNDLSEEEAEEIITILYNNRYEKDPQKQWLKMHKDGVFRDRDF
Ga0209634_10005162	F008782	N/A	MKKPIFRIFVSYEIKNKAAVTRKVTMGILDTFALTSNIDQIKKDQELIDRICYVNKKKLNKVEVTITNVDVEYQYGETTDRFDDEY
Ga0209634_100051643	F058456	N/A	MKKMDILYLNEGHQAVVEFLMEDVKKIMYYATEDEIAGKYQDFLNILDSVYLYSNNFHETTLKIEGDDGAMAEFIFLIPNMLFYTTIGFLTALKTKENGDAMVVHLEKIANLCENSTGELADVLIDATDEKRLLEGVLQKETTNN