Scaffold Ga0209634_1000498

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1000498
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30437
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (86.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010848	Metagenome / Metatranscriptome	298	Y
F023113	Metagenome / Metatranscriptome	211	Y
F047067	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100049830	F047067	AGGAG	MAQSKGNGAGVGDFTTGTLIQKHSVACILVDTGADLRTEDDATREAVERALQMIQPLAYEVTDDNSGKIHAVVDSSQFDAASLQKHLRAIGTDDVNSYNFSGTTVTAGTSLTVA
Ga0209634_100049831	F010848	AGGAG	MAQVDRRAAASGEFIGKDVFLKSFQQQSGNISATQLTSLVSTVQSLNLSILKVGSFTAGTSDTVKMIVEGADNLANGDITAHVIADVTF
Ga0209634_100049833	F023113	GAG	MPKKTDPEKDIKPYVASGNIEAHIIADMLRIESITAELREFKEVTKDRLNKLESWIIAIVGLTFTSLVSIIIGIVINLV