Scaffold Ga0209634

Basic Information
Taxon OID	3300025138 Open in IMG/M
Scaffold ID	Ga0209634_1000244 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025138 Open in IMG/M

Scaffold ID

Ga0209634_1000244 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42612
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (67.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

42612

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (67.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009291	Metagenome / Metatranscriptome	320	N
F016497	Metagenome / Metatranscriptome	246	N
F037973	Metagenome	167	N
F062240	Metagenome	131	Y
F076876	Metagenome	117	N
F096042	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100024422	F096042	AGGA	MNIRDKIKKASALRNKEVYIQAANGKFGFKVSGKGTYIWTSEEAENEAAMWKAESNLSKRCFKKEVKSYELKVVGENNFWVITELDGTVIVIDTIEYTMAYYMRARTKKAKVGDWKLPHKCYGYYTDSSCVAREEADLAEMYSTDNLDWMGEKDSYYRWRANFVSLIKETFK
Ga0209634_100024423	F076876	GGA	MRNTNRFYAGLITMTLGFSLISNGSAEDKNFLWESDGSLTIVDGAKDSGYIIEDGEVKTYVIPSDTEKTFIQDGPSGKLIVCDPAIGCY
Ga0209634_100024424	F062240	GGAG	MTKDEKDKIMKQLLADAGYDYEPKPRKDGDEIWTSCGQDVPKDLKPISKETKDKISKSRRSEGLKSLLDKN
Ga0209634_100024426	F009291	GGA	MLILIVMRITPNQFKEIMRFFDAGDYESRKKAIDMLYGGFSTHFIIKIKREFMHNNYDDDTAEDILHDVFHSLLKKRTKPSSPFAISAWLDTYVFNVARDNLKKAYRHKEFSYHTETKSDDDAISSVVDETNTKDSMMISECIKQVMEETQKDYPEKMELFTKVKLEGESYSDLTHIYGKTISNLKKIVSEMNTMLKVLIQPCKERAN
Ga0209634_10002445	F016497	AGGAG	MKNKKLENKKLEEITVQDMMLTPMGCKIVAETAIKSLAGQIGKWAEEYPEERENYQADIEVLWRTLWLFNKCDFLFKDPAPKNEDLAA
Ga0209634_10002447	F037973	GGAG	MKKINRFYTGLITMTLSFSLLGLANAGPGDIDLFPSGNSNNNSGDNSFYKDDGSLVIIRGAKDSGLIVRGTDEGTETEYYVVPKDDGSKTFIYDDELLVCDNNGCY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209634_1000244

Overview

Ecosystem & Geography

Associated Families

Sequences